Time to bump this again, and time to add more info.
1. The jet colors only show as incorrect in mission when you are host. The energy trails show as correct at that time, however.
2. When you are a client, the jet colors are correct, but the energy trails incorrectly revert to default, and are spaced for the Step Tens model jets.
3. When you are in the Arsenal, the colors for the jets do not show correctly, unless (as someone stated above) you are actively picking a color.
4. The color selection of the entire board carries over when you are selecting another board to equip, but switches back to the appropriate colors (barring jets) when finally selected.