Finnelis

Same here, in my case, I think there was an issue because my game crashed during the second mission. I did manage to reconnect to my squad after the crash but the game seems to be treating it as a separate run or something. This problem has been compounded for me by the fact that, since their release, Alchemy missions have been extremely unstable on my PC.

Same thing happened to me, I had all the effects selected, and all 4 correct loadouts yet in the end I was only awarded 15 research points. I didn't die a single time during the mission. The only thing that went wrong is that I did get disconnected during the second mission (the game client crashed during Alchemy which, sadly often happens during alchemy missions for me).