Keyboard controls bugged for Archwing?

[Tipertuba]

Hi all!

I saw some posts where people complained that when you changed controls on warframe, it wouldn't reflect on archwing.

I prefer swaping Shift and Ctrl to avoid pain in my pinkie on long runs. The problem is when it's a mission with archwing, I expected Ctrl to work as the "boost" on archwing, or shift (preferably), but I'm not able to use it all and I need to reset to default controls. 

Then, any regular missions, I change it again.

I'm asking this as the posts I saw were from 2014, so maybe this is fixed and is something quick to set..

Has anyone been through this?

Thanks!