Yeah! Just like when the Tenno lost their powers during The Old War and... eh... let me check...
... nothing happened to the Warframes...
Stalker's Codex clearly says he was a low Guardian the day the Orokin fell. Not a Warframe. Also not a Warframe whose Tenno lost Void powers.
I know that some people really want Stalker to be special, but he's just the most pathetic of all Dax, the most slavish and Orokin-obsessed of them all.