When I first made this post I thought it was the netracells or wellspring bugging out causing me unable to play. But, as it turns out it was Baruuk the whole time. I tried it with other frames and had no issues. I don't know if it's one or multiple bugs causing issues but it's also happening outside of netracells as well in normal missions.
But to clarify:
Warframe in question: Baruuk Prime
Issues:
1. Using wellspring will cause Baruuk to be unable to use weapons or abilities
2. Using an ability will sometimes trigger the same bug and be unable to use abilities
3. When attacking with his 4th or weapons, his damage will be doing fine and then out of no where it will drop off and no damage numbers will appear.
4. Not sure if I missed it in his patch notes, but before I had all tao forged violet shards on Baruuk his desert wind crit multiplier use to be at a x15 with all red tao forged. Now that I have all violet tao forged on him it is only sitting at a x12.5(even when over 500 energy)