Basically, Elite Archimedea loadout will change if the player claim new weapon from his/her foundry (excluding syndicate weapons I believe) so be careful.
For example if the player already mastered Dual keres the player can't change Elite loadout with unranked Dual keres prime .
However, if the player doesn't master Dual keres but claim Dual keres prime from his/her foundry then that weapon will be add in melee weapons loadout in Elite Archimedea.